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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 16:16:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 42196 from Patent EP2761003.
JC656415.1:117-135
ATATATAGTTCCAGTTATTGTTCAAATATA117TGTGGAGTCGAAGCATGAATGTCAATTGGCTTGTTTGACTTTTGTTGGC
Sequence 42267 from Patent EP2761003.
JC656486.1:113-131
ATATATAGTTCCAGTTATTGTTCAAATATA113TGTGGAGTCGAAGCATGAATGTCAATTGGCTTGTTTGACTTTTGTTGGC
Phycisphaeraceae bacterium isolate 55aab3a5-de4e-4c55-acd5-ede7382e386b genome assembly, chromosome: 1.
OY763327.1:282399-282417
TATATGCGCTTGATGCTGATGGAAACACCA282399TGTGGAGTCGAAGCATGAATCCACGGCGTAATGCAGCGCTAACGGGTAA
5316_F11_L22Z_085 Brachypodium distachyon stem plus sheath EST library Brachypodium distachyon cDNA clone 5316_F11_L22, mRNA sequence.
DV478483.1:744-762
GCACATTGGGAAGAGCTTCCGACTTTCTGC744TGTGGAGTCGAAGCATGAAAATCTAGTCAGAGATGCGCATGACGAGGCT
Manihot esculenta clone POYE308-11 starch branching enzyme I (sbeI) gene, partial cds.
HM046986.1:206-224
ATATATAGTTCCAGTTATTGTTCAAATTTA206TGTGGAGTCGAAGCATGAATGTCAATTGGCTTGTTTGACTTTTGTTGGC
Manihot esculenta clone POYE308-12 starch branching enzyme I (sbeI) gene, partial cds.
HM046987.1:206-224
ATATATAGTTCCAGTTATTGTTCAAATATA206TGTGGAGTCGAAGCATGAATGTCAATTGGCTTGTTTGACTTTTGTTGGC
Geum urbanum genome assembly, chromosome: 13.
OX327009.1:18092204-18092222
CTCGGCACGGCAATTAGATTGTTTGTTGCG18092204TGTGGAGTCGAAGCATGAATTCGGTTAGAGCACGAGCTGTGAGGCATGA
Sphaeramia orbicularis genome assembly, chromosome: 14.
LR597471.1:34896662-34896680
ATTTTCACCTTTTCCTCCACCACTCCCTCC34896662TTCATGCTTCGACTCCACACTGGGAATTGTCTCTCTTATCTTCCCCGCC
Meleagris gallopavo genome assembly, chromosome: 3.
OW982254.1:62252525-62252543
AGATTTATGGTAATATTTACTAAACGCTGC62252525TTCATGCTTCGACTCCACACACTAGAACATAATTTACTAGAAAACACAA
Meleagris gallopavo genome assembly, chromosome: 3.
OW982293.1:62230767-62230785
AGATTTATGGTAATATTTACTAAACGCTGC62230767TTCATGCTTCGACTCCACACACTAGAACATAATTTACTAGAAAACACAA
MAG: Avian associated hepe-like virus 13 isolate BOPU genomic sequence.
OQ986655.1:99-117
TTGCACCAAAGAACACGACCATCGTTTCGG99TTCATGCTTCGACTCCACACATTCTCACAATATTGGTTACCCGACCGTT
Bruchidius siliquastri genome assembly, chromosome: 7.
OX438535.1:4766359-4766377
TAGAAGATTCATGACTAATTCCAGGATGTT4766359TTCATGCTTCGACTCCACAGCACAGCTTTACTATTCGTTTAACCACTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGTGGAGTCGAAGCATGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTGGAGTCGAAGCATGAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.438 | 0.430 | search_plus_done; http://172.18.8.135:50400/match?q=TGTGGAGTCGAAGCATGAA&k=0&no_gap=0&offset=0&limit=50
0.561 | 0.123 | search_minus_done; http://172.18.8.135:50400/match?q=TTCATGCTTCGACTCCACA&k=0&no_gap=0&offset=0&limit=43
0.564 | 0.003 | cgi_end;

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